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If a Periodic Condition is applied along one axis, then all the boundaries in the geometry whose normals lie along that axis must be selected. Periodic boundary conditions cannot be selectively applied on a part of the geometry along a chosen direction.
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The software usually automatically identifies the boundaries as either source boundaries or destination boundaries, as indicated in the selection list. This works fine for cases like opposing parallel boundaries. In other cases, right-click Periodic Condition and select Manual Destination Selection to control the destination. By default it contains the selection that COMSOL Multiphysics identifies.
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