In the predefined study sequences, the Include geometric nonlinearity checkbox is selected by default also in the stationary prestress study step.
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If you use a local coordinate system for describing a load, you must, in case of geometric nonlinearity, pay attention to whether that coordinate system has constant axis orientations or not. As an example, the default boundary system has Frame set to Deformed Configuration, so that a load represented in that system will behave as a follower load. Change to Reference Configuration if the load should act in fixed directions.
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There are three Preset study types which can be used to set up these two study steps: Eigenfrequency, Prestressed; Frequency Domain, Prestressed; and Linear Buckling.
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If you want to explicitly prescribe the stress field for a prestressed analysis rather than solving for it, you should not use the two study step procedure. In such a case, prescribe the stress field using an Initial Stress and Strain, External Stress, or External Strain node. Then add a separate Eigenfrequency or Frequency Domain study and select Include Geometric Nonlinearity in the settings for the study step.
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Eigenfrequency, Prestressed, Frequency Domain, Prestressed, and Linear Buckling in the COMSOL Multiphysics Reference Manual
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