Species
When a Reaction is defined, a Species node () is automatically generated for the participating reactants and products. This feature enables you to review and enter species specific information regarding chemical kinetics, thermodynamics and transport properties.
It is also possible to add and define an individual Species node: on the Reaction Engineering toolbar click Species or right-click the Reaction Engineering node and select it from the context menu.
Species Name
When a Species node is automatically generated using the Formula text field for the Reaction node, the Species name is also automatically generated.
For a Species node added individually, enter a Species name in the field and click Apply.
Species Type
Select a species type — Bulk species, Surface species, or Solvent.
Bulk species and Solvent are solved for volumetric concentrations (SI unit: mol/m3), while Surface species are solved for surface concentration (SI unit: mol/m2). The compositions for Bulk species and Solvent use the syntax c_speciesname, while Surface species uses csurf_speciesname_surf.
Surface species is referring to species adsorbed on a reactive surface. When Surface species is selected, the corresponding reaction formula introduces (ads) after the species notation and changes the species’ name to speciesname_surf. Additionally, the Species node name is updated in a similar fashion.
For the Plug flow reactor only Bulk species and Solvent are allowed.
General Parameters
The General Parameters section deals with species parameters.
The default value for the Molar mass, M (only shown when needed), and the ionic Charge, z, of the species is automatically defined from the species name by assuming that it corresponds to its chemical formula. Provided that the formula contains elements from the periodic table, the species molar mass is computed from mass the of occurring individual elements1. When the species name contains parts not in the periodic table, for example when a descriptive name such as water is used, the molar mass is set to 0.0 kg/mol and the charge to zero. In this case, the molar mass needs to be defined in order to achieve mass balanced reactions and correct definitions of mass basis properties. The species charge is also deduced from the species name. Creating a H+ species, the charge will be set to one. When needed, both the Molar mass and the Charge can be edited in the corresponding edit field.
It is possible to specify the species density ρ when the fluid Mixture is specified as Liquid. The default value is that of water at 293 K.
Reaction Rate
Change the Automatic default setting to User defined to use a species reaction rate other than the one set up in the associated Reaction node. For individual species, use the User defined option to set a reaction rate other than zero (that is, nonreactive).
Edit either the Rate expression (SI unit: mol/(m3s)), the Surface rate expression (SI unit: mol/(m2s)), or both. For a bulk species, both expressions appear if surface reactions are present in the reactor since the reaction of the species can depend both on bulk reaction R and surface reaction Rads rates. For a surface species, only the surface reaction rate Rads appears.
The reaction rate is not editable if the species in question participates in an equilibrium reaction and has been selected as a Predefined dependent species in Calculate Transport Properties.
Species concentration/Activity
To account for nonideality in the fluid mixture adjust the activity coefficient in the Activity coefficient text field here. The section is only shown if activity instead of concentration has been chosen in the interface; that is, the Use activities check box is selected on the Reaction Engineering interface Settings window
Click to select the Constant concentration/activity check box if the species concentration or activity should be treated as constant.
Species Transport Expressions
Here the required parameters to compute various transport properties can be edited. To show this section the Calculate mixture properties check box needs to be selected under the Calculate Transport Properties section.
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σ, the characteristic length (unit: Å) of the Lennard-Jones/Stockmayer potential
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ε/kb (SI unit: K) the potential energy minimum value of the of the Lennard-Jones/Stockmayer potential, divided by Boltzmann’s constant. Tabulated data in literature frequently lists values of ε/kb rather than ε
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μD, the dipole moment (SI unit: Debye)
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ki, the thermal conductivity of the gas (SI unit: W/(m K)); and Diffusivity of the species (SI unit: m2/s). The latter two can be set to Automatic, when σ and ε/kb have been given.
For mixtures of gas with solvent, all properties above except the thermal conductivity is shown. This is instead calculated under the Calculate mixture properties section on the Settings window for the Reaction Engineering interface. This requires that Energy Balance is set to Included.
For a liquid mixture, there is only the parameter ki, the thermal conductivity (SI unit: W/(m K)) to edit.
Species Thermodynamic Expressions
The parameters utilized for calculation of thermodynamic mixture and reaction properties are set in this section. It is accessed when the Energy Balance is set to Include for the Reaction Engineering interface, in other words for nonisothermal conditions.
The Species Thermodynamic Expressions are by default computed using data in the NASA format. In this case, enter the following to compute the species’ heat capacity, Cp (SI unit: J/(molK)), the molar enthalpy, h (SI unit: J/mol), and the molar entropy, s (SI unit: J/(molK)):
Polynomial coefficients alow,k and ahi,k
Any coefficients for the thermodynamic polynomials entered into the alow,k fields apply to the temperatures in the range Tlo to Tmid; coefficients entered into the ahi,k fields apply to temperatures in the range Tmid to Thi range. The coefficients can also be imported in the CHEMKIN Import for Species Properties section in the Reaction Engineering node.
Choose the User defined alternative to specify Cp, h, and s directly.

1
Values are averages of upper and lower bounds for each atom as published by CIAAW. Source: CIAAW. Atomic weights of the elements 2019. Available online at www.ciaaw.org.